Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSWIM7_chr17_15971560_16004704	0/0	g0190	1	0	0	1	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0191	1	0	0	0	0	1	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0192	1	0	0	1	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0193	1	0	0	1	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0194	1	1	0	0	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0195	1	0	0	0	0	1	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0196	1	0	0	0	0	1	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0197	1	1	0	0	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0198	1	0	0	0	0	1	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0199	1	0	0	1	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0200	1	0	0	1	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0201	1	0	0	1	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0202	1	0	0	1	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0203	1	0	0	1	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0204	1	1	0	0	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0205	1	0	0	0	0	1	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0206	1	0	0	1	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0207	1	0	1	0	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0208	1	0	1	0	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0209	1	1	0	0	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0210	1	1	0	0	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0211	1	1	0	0	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0212	1	1	0	0	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0213	1	1	0	0	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0214	1	1	0	0	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0215	1	1	0	0	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM7_chr17_15971560_16004704	0/0	g0216	1	1	0	0	0	0	ZSWIM7	chr17	15971560	16004704
ZSWIM8_chr10_73780606_73806793	1/1	g0001	92	19	10	52	1	8	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0002	31	6	6	10	3	6	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0003	19	2	2	11	1	3	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0004	8	1	1	3	1	2	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0005	6	0	0	5	0	1	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0006	6	0	6	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0007	6	4	0	0	0	2	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0008	5	0	0	5	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0009	5	0	0	4	0	1	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0010	4	0	0	3	0	1	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0011	4	3	0	1	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0012	4	1	0	3	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0013	4	3	0	1	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0014	3	1	2	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0015	3	3	0	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0016	3	0	0	3	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0017	3	0	0	0	0	3	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0018	3	0	0	0	0	3	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0019	3	0	1	0	2	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0020	3	0	1	1	0	1	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0021	3	0	3	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0022	2	1	1	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0023	2	2	0	0	0	0	ZSWIM8	chr10	73780606	73806793