Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	SAS	genename	chr	start	end
ZSWIM8_chr10_73780606_73806793	0/0	g0074	1	0	0	1	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0075	1	0	0	1	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0076	1	1	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0077	1	0	1	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0078	1	0	0	0	1	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0079	1	0	0	0	1	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0080	1	0	0	1	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0081	1	0	0	1	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0082	1	0	0	0	1	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0083	1	0	0	1	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0084	1	0	0	1	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0085	1	0	1	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0086	1	0	1	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0087	1	0	1	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0088	1	0	0	1	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0089	1	0	0	1	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0090	1	1	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0091	1	0	1	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0092	1	1	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0093	1	1	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0094	1	1	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0095	1	0	1	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0096	1	1	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0097	1	0	0	1	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0098	1	0	0	1	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0099	1	0	0	0	1	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0100	1	1	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0101	1	1	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0102	1	0	1	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0103	1	1	0	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0104	1	0	1	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM8_chr10_73780606_73806793	0/0	g0105	1	0	1	0	0	ZSWIM8	chr10	73780606	73806793
ZSWIM9_chr19_48165680_48202620	0/0	g0001	3	3	0	0	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0002	3	0	0	3	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0003	3	3	0	0	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0004	2	0	2	0	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0005	2	0	1	0	1	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0006	2	0	1	1	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0007	2	0	0	2	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0008	2	0	0	2	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0009	2	0	0	2	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0010	2	0	0	1	1	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0011	2	2	0	0	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0012	2	0	2	0	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0013	2	0	0	2	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0014	2	0	2	0	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0015	2	2	0	0	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0016	2	0	0	0	2	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0017	2	0	0	2	0	ZSWIM9	chr19	48165680	48202620
ZSWIM9_chr19_48165680_48202620	0/0	g0018	2	2	0	0	0	ZSWIM9	chr19	48165680	48202620