Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZWILCH_chr15_66500326_66555130	0/0	g0374	1	0	0	0	0	1	ZWILCH	chr15	66500326	66555130
ZWILCH_chr15_66500326_66555130	0/0	g0375	1	0	1	0	0	0	ZWILCH	chr15	66500326	66555130
ZWINT_chr10_56352227_56366259	0/1	g0001	152	6	26	105	4	10	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0002	69	4	11	46	1	7	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0003	64	30	20	1	5	8	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0004	54	9	10	21	4	10	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0005	30	8	5	16	0	1	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0006	9	0	0	8	0	1	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0007	9	8	1	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0008	5	5	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0009	4	4	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0010	3	3	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0011	3	3	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0012	3	3	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0013	3	3	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0014	2	0	0	0	0	2	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0015	2	0	0	2	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0016	2	1	1	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0017	2	2	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0018	2	0	0	2	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0019	2	2	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0020	2	0	0	2	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0021	2	0	2	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0022	1	1	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0023	1	0	0	0	0	1	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0024	1	1	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0025	1	0	0	1	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0026	1	0	1	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0027	1	0	0	1	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0028	1	0	0	1	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0029	1	0	1	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0030	1	1	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0031	1	1	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	1/0	g0032	1	0	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0033	1	0	0	1	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0034	1	0	0	1	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0035	1	1	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0036	1	1	0	0	0	0	ZWINT	chr10	56352227	56366259
ZWINT_chr10_56352227_56366259	0/0	g0037	1	1	0	0	0	0	ZWINT	chr10	56352227	56366259
ZXDA_chrX_57900430_57915458	1/1	g0000	320	79	54	144	9	32	ZXDA	chrX	57900430	57915458
ZXDB_chrX_57587011_57602477	1/1	g0000	297	70	57	133	9	26	ZXDB	chrX	57587011	57602477
ZXDC_chr3_126432601_126480891	0/0	g0001	19	0	0	17	0	2	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	g0002	18	0	3	13	1	1	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	g0003	7	7	0	0	0	0	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	g0004	7	0	3	4	0	0	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	g0005	6	0	0	6	0	0	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	g0006	6	0	0	5	0	1	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	g0007	6	1	2	0	2	1	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	g0008	6	0	3	0	1	2	ZXDC	chr3	126432601	126480891
ZXDC_chr3_126432601_126480891	0/0	g0009	6	0	2	0	1	3	ZXDC	chr3	126432601	126480891