Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZYG11B_chr1_52721453_52832336	0/0	g0339	1	1	0	0	0	0	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	g0340	1	1	0	0	0	0	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	g0341	1	1	0	0	0	0	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	g0342	1	1	0	0	0	0	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	g0343	1	1	0	0	0	0	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	g0344	1	1	0	0	0	0	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	g0345	1	0	1	0	0	0	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	g0346	1	1	0	0	0	0	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	g0347	1	0	1	0	0	0	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	g0348	1	0	0	1	0	0	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	g0349	1	1	0	0	0	0	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	g0350	1	1	0	0	0	0	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	g0351	1	1	0	0	0	0	ZYG11B	chr1	52721453	52832336
ZYG11B_chr1_52721453_52832336	0/0	g0352	1	1	0	0	0	0	ZYG11B	chr1	52721453	52832336
ZYX_chr7_143376345_143396111	0/0	g0001	52	4	4	41	0	3	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0002	34	3	3	23	0	5	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/1	g0003	27	3	12	1	3	7	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0004	21	13	2	2	1	3	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0005	20	0	1	15	2	2	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0006	16	0	7	8	0	1	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0007	14	3	3	5	3	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0008	13	0	2	7	1	3	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0009	12	2	3	3	3	1	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0010	11	0	1	9	0	1	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0011	10	0	5	2	0	3	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0012	8	0	5	0	3	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0013	6	0	0	6	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0014	6	6	0	0	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0015	5	0	4	1	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0016	5	0	1	3	0	1	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0017	5	5	0	0	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0018	5	1	0	3	0	1	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0019	4	0	1	3	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0020	4	3	1	0	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0021	4	4	0	0	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0022	4	4	0	0	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0023	4	3	1	0	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0024	3	0	0	1	0	2	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0025	3	0	0	3	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0026	3	0	0	3	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0027	3	0	0	3	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0028	3	2	0	0	0	1	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0029	3	0	0	3	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0030	3	0	0	3	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0031	3	0	1	2	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	1/0	g0032	2	1	0	0	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0033	2	0	1	1	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0034	2	0	2	0	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0035	2	0	1	1	0	0	ZYX	chr7	143376345	143396111
ZYX_chr7_143376345_143396111	0/0	g0036	2	0	0	2	0	0	ZYX	chr7	143376345	143396111