JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C16orf46_chr16_81055980_81082238	0/0	g0212	1	0	0	1	0	0	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	g0213	1	0	0	0	1	0	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	g0214	1	0	1	0	0	0	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	g0215	1	0	1	0	0	0	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	g0216	1	0	0	1	0	0	C16orf46	chr16	81055980	81082238
C16orf54_chr16_29737463_29750990	0/0	g0001	159	30	27	70	7	25	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0002	40	5	11	17	2	5	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0003	30	5	9	12	1	3	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0004	13	2	2	5	0	4	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0005	8	7	1	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0006	7	7	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0007	5	5	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0008	4	4	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0009	3	3	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0010	3	3	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0011	3	3	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0012	3	1	2	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0013	2	0	0	0	1	1	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	1/0	g0014	2	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0015	2	0	1	1	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0016	2	2	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0017	1	0	0	0	1	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0018	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0019	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0020	1	0	1	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0021	1	0	0	1	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0022	1	0	1	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0023	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0024	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0025	1	0	0	0	1	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0026	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0027	1	0	0	0	1	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0028	1	0	1	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0029	1	0	1	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/1	g0030	1	0	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0031	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0032	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0033	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0034	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0035	1	0	1	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0036	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0037	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0038	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0039	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	g0040	1	1	0	0	0	0	C16orf54	chr16	29737463	29750990
C16orf74_chr16_85702517_85756096	0/0	g0001	2	0	1	1	0	0	C16orf74	chr16	85702517	85756096
C16orf74_chr16_85702517_85756096	0/0	g0002	2	0	2	0	0	0	C16orf74	chr16	85702517	85756096
C16orf74_chr16_85702517_85756096	0/0	g0003	1	1	0	0	0	0	C16orf74	chr16	85702517	85756096
C16orf74_chr16_85702517_85756096	0/0	g0004	1	1	0	0	0	0	C16orf74	chr16	85702517	85756096
C16orf74_chr16_85702517_85756096	0/0	g0005	1	1	0	0	0	0	C16orf74	chr16	85702517	85756096