JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACOT2_chr14_73564213_73580655	0/0	g0091	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0092	1	1	0	0	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0093	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0094	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0095	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0096	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0097	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0098	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0099	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0100	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0101	1	0	0	0	0	1	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0102	1	0	0	0	0	1	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0103	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0104	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0105	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0106	1	0	1	0	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0107	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0108	1	0	1	0	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0109	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0110	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0111	1	1	0	0	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0112	1	0	0	1	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0113	1	0	1	0	0	0	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0114	1	0	0	0	0	1	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0115	1	0	0	0	0	1	ACOT2	chr14	73564213	73580655
ACOT2_chr14_73564213_73580655	0/0	g0116	1	0	0	0	1	0	ACOT2	chr14	73564213	73580655
ACOT4_chr14_73586873_73600766	0/0	g0001	120	3	17	87	3	10	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0002	69	18	6	42	1	2	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	1/1	g0003	26	0	10	2	4	8	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0004	18	2	15	0	1	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0005	15	0	2	12	0	1	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0006	12	4	0	6	1	1	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0007	8	0	4	0	2	2	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0008	8	2	0	3	0	3	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0009	8	1	3	4	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0010	7	0	1	3	0	3	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0011	7	5	1	0	0	1	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0012	6	6	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0013	6	1	0	5	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0014	6	5	1	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0015	6	0	0	5	0	1	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0016	5	3	1	1	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0017	5	3	0	2	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0018	5	0	0	5	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0019	4	0	3	0	0	1	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0020	4	0	0	0	0	4	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0021	4	4	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0022	4	4	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0023	3	3	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0024	3	0	0	3	0	0	ACOT4	chr14	73586873	73600766