JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACOT4_chr14_73586873_73600766	0/0	g0025	3	3	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0026	2	0	1	0	1	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0027	2	0	0	1	0	1	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0028	2	2	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0029	2	2	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0030	2	0	0	2	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0031	2	0	1	1	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0032	2	0	2	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0033	2	1	1	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0034	1	0	0	0	1	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0035	1	0	0	0	0	1	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0036	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0037	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0038	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0039	1	0	1	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0040	1	0	1	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0041	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0042	1	0	0	1	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0043	1	0	1	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0044	1	0	1	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0045	1	0	0	1	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0046	1	0	0	1	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0047	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0048	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0049	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0050	1	0	0	0	0	1	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0051	1	0	1	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0052	1	0	0	1	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0053	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0054	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0055	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0056	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0057	1	0	1	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0058	1	0	1	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0059	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0060	1	0	1	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0061	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0062	1	0	1	0	0	0	ACOT4	chr14	73586873	73600766
ACOT4_chr14_73586873_73600766	0/0	g0063	1	1	0	0	0	0	ACOT4	chr14	73586873	73600766
ACOT6_chr14_73607517_73624888	0/0	g0001	106	6	16	63	4	17	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	g0002	23	2	0	21	0	0	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	g0003	23	2	5	14	0	2	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	g0004	21	3	2	15	1	0	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	1/1	g0005	16	0	8	2	3	1	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	g0006	11	0	0	11	0	0	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	g0007	9	0	6	0	0	3	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	g0008	9	0	0	9	0	0	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	g0009	6	0	0	5	0	1	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	g0010	5	0	1	3	0	1	ACOT6	chr14	73607517	73624888
ACOT6_chr14_73607517_73624888	0/0	g0011	5	0	1	4	0	0	ACOT6	chr14	73607517	73624888