JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C16orf89_chr16_5039122_5070956	0/0	g0353	1	1	0	0	0	0	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	g0354	1	0	0	1	0	0	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	g0355	1	0	0	1	0	0	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	g0356	1	0	0	1	0	0	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	g0357	1	0	0	1	0	0	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	g0358	1	1	0	0	0	0	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	g0359	1	1	0	0	0	0	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	g0360	1	0	0	1	0	0	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	g0361	1	0	0	1	0	0	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	g0362	1	1	0	0	0	0	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	g0363	1	1	0	0	0	0	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	g0364	1	1	0	0	0	0	C16orf89	chr16	5039122	5070956
C16orf90_chr16_3488484_3500489	1/1	g0001	213	32	38	117	9	15	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0002	129	32	22	50	3	22	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0003	12	2	1	9	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0004	12	0	0	12	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0005	11	11	0	0	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0006	11	0	0	11	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0007	9	0	5	0	2	2	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0008	7	4	2	0	0	1	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0009	5	3	2	0	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0010	5	0	5	0	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0011	4	4	0	0	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0012	3	2	0	0	0	1	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0013	3	0	0	3	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0014	2	2	0	0	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0015	2	2	0	0	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0016	1	0	0	0	0	1	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0017	1	1	0	0	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0018	1	0	0	1	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0019	1	0	0	0	0	1	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0020	1	0	0	1	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0021	1	0	0	1	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0022	1	0	0	1	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0023	1	0	0	0	0	1	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0024	1	1	0	0	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0025	1	0	0	1	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0026	1	0	0	1	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0027	1	0	0	0	0	1	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0028	1	0	0	1	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0029	1	0	1	0	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0030	1	0	0	0	0	1	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0031	1	0	0	1	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0032	1	0	0	1	0	0	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	g0033	1	0	0	1	0	0	C16orf90	chr16	3488484	3500489
C16orf92_chr16_30018198_30029704	1/1	g0001	308	71	61	130	13	31	C16orf92	chr16	30018198	30029704
C16orf92_chr16_30018198_30029704	0/0	g0002	34	3	10	16	1	4	C16orf92	chr16	30018198	30029704
C16orf92_chr16_30018198_30029704	0/0	g0003	4	4	0	0	0	0	C16orf92	chr16	30018198	30029704
C16orf92_chr16_30018198_30029704	0/0	g0004	3	3	0	0	0	0	C16orf92	chr16	30018198	30029704
C16orf92_chr16_30018198_30029704	0/0	g0005	1	1	0	0	0	0	C16orf92	chr16	30018198	30029704