JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C19orf18_chr19_57953437_57979534	0/0	g0280	1	0	0	1	0	0	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	g0281	1	0	1	0	0	0	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	g0282	1	0	1	0	0	0	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	g0283	1	0	0	1	0	0	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	g0284	1	1	0	0	0	0	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	g0285	1	1	0	0	0	0	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	g0286	1	1	0	0	0	0	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	g0287	1	1	0	0	0	0	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	g0288	1	1	0	0	0	0	C19orf18	chr19	57953437	57979534
C19orf25_chr19_1468201_1484215	0/0	g0001	67	13	13	27	3	11	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0002	66	2	6	40	3	15	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/1	g0003	54	0	17	27	2	7	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0004	27	0	2	24	0	1	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0005	10	10	0	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0006	9	9	0	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0007	6	0	6	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0008	5	0	5	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0009	4	3	0	0	0	1	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0010	4	2	2	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0011	4	1	0	0	1	2	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0012	4	0	0	4	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0013	4	0	0	3	0	1	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0014	4	0	4	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0015	4	0	0	4	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0016	3	0	0	1	1	1	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0017	3	0	0	0	0	3	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0018	3	1	2	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0019	3	3	0	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0020	2	0	2	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0021	2	2	0	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0022	2	0	0	2	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0023	2	0	2	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	1/0	g0024	2	0	1	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0025	2	2	0	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0026	2	0	2	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0027	2	0	1	0	1	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0028	2	0	0	2	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0029	2	2	0	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0030	2	0	0	2	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0031	2	1	1	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0032	2	0	0	2	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0033	2	2	0	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0034	2	0	2	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0035	2	0	0	2	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0036	2	0	2	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0037	2	0	0	1	0	1	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0038	2	0	2	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0039	2	2	0	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0040	2	2	0	0	0	0	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	g0041	2	2	0	0	0	0	C19orf25	chr19	1468201	1484215