JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C19orf44_chr19_16491394_16526352	0/0	g0153	1	0	1	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0154	1	1	0	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0155	1	1	0	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0156	1	1	0	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0157	1	0	1	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0158	1	0	1	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0159	1	0	1	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0160	1	0	1	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0161	1	0	1	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0162	1	0	0	1	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0163	1	0	1	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0164	1	1	0	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0165	1	1	0	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0166	1	0	0	1	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0167	1	1	0	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0168	1	0	1	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0169	1	0	1	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0170	1	0	0	0	1	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0171	1	1	0	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0172	1	1	0	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0173	1	1	0	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0174	1	0	1	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0175	1	0	0	0	1	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0176	1	1	0	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0177	1	0	1	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0178	1	1	0	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0179	1	1	0	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0180	1	0	0	1	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0181	1	0	1	0	0	0	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	g0182	1	1	0	0	0	0	C19orf44	chr19	16491394	16526352
C19orf47_chr19_40314536_40353397	0/0	g0001	14	1	0	13	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0002	8	0	4	3	1	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0003	7	0	0	3	3	1	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0004	4	4	0	0	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0005	4	0	0	3	1	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0006	4	0	4	0	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0007	4	0	0	3	0	1	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0008	4	0	0	4	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0009	4	0	0	3	0	1	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0010	4	4	0	0	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0011	3	3	0	0	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0012	3	3	0	0	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0013	3	0	0	3	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0014	3	3	0	0	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0015	3	2	1	0	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0016	2	0	2	0	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0017	2	0	0	2	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0018	2	0	2	0	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0019	2	0	2	0	0	0	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	g0020	2	1	1	0	0	0	C19orf47	chr19	40314536	40353397