JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C19orf84_chr19_51383289_51395591	0/0	g0014	2	0	2	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0015	2	2	0	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0016	2	2	0	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0017	1	1	0	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0018	1	0	0	1	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0019	1	0	1	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0020	1	0	0	1	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0021	1	0	0	1	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0022	1	1	0	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0023	1	1	0	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0024	1	1	0	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0025	1	0	0	1	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0026	1	1	0	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0027	1	1	0	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0028	1	1	0	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0029	1	1	0	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0030	1	1	0	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0031	1	0	0	1	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0032	1	1	0	0	0	0	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	g0033	1	0	0	1	0	0	C19orf84	chr19	51383289	51395591
C19orf85_chr19_55458001_55469751	1/0	g0001	314	33	59	161	15	45	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0002	29	23	5	0	1	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0003	11	10	1	0	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0004	7	6	1	0	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0005	5	1	2	0	0	2	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0006	4	0	2	0	2	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0007	4	0	0	4	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0008	4	4	0	0	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0009	3	2	1	0	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0010	3	3	0	0	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0011	3	3	0	0	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0012	3	3	0	0	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/1	g0013	2	0	0	1	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0014	2	2	0	0	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0015	1	0	1	0	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0016	1	0	0	0	0	1	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0017	1	1	0	0	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0018	1	1	0	0	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0019	1	1	0	0	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0020	1	0	0	1	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0021	1	1	0	0	0	0	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	g0022	1	0	0	1	0	0	C19orf85	chr19	55458001	55469751
C1D_chr2_68036130_68068004	0/0	g0001	41	0	0	39	0	2	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0002	7	0	2	2	3	0	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0003	7	0	2	2	0	3	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0004	7	2	1	0	0	4	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0005	7	7	0	0	0	0	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0006	6	0	4	2	0	0	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0007	6	0	6	0	0	0	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0008	6	1	1	0	0	4	C1D	chr2	68036130	68068004