JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1D_chr2_68036130_68068004	0/0	g0209	1	1	0	0	0	0	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0210	1	1	0	0	0	0	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0211	1	0	1	0	0	0	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0212	1	0	1	0	0	0	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0213	1	0	1	0	0	0	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0214	1	1	0	0	0	0	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0215	1	0	1	0	0	0	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0216	1	1	0	0	0	0	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	g0217	1	1	0	0	0	0	C1D	chr2	68036130	68068004
C1GALT1C1L_chr2_43670151_43681429	1/1	g0000	396	92	76	164	12	50	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1_chrX_120620674_120635054	0/0	g0001	114	15	18	73	1	7	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	1/0	g0002	85	16	11	47	4	6	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0003	38	0	9	11	3	15	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0004	14	13	1	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0005	13	0	0	13	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0006	6	0	4	0	1	1	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0007	5	0	2	0	2	1	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0008	4	3	1	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0009	4	0	0	4	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0010	4	4	0	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0011	3	3	0	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0012	3	0	0	3	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0013	3	3	0	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0014	3	3	0	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0015	2	2	0	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0016	2	0	0	1	0	1	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/1	g0017	2	0	0	0	1	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0018	2	0	0	0	1	1	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0019	1	0	0	1	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0020	1	0	0	1	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0021	1	1	0	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0022	1	1	0	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0023	1	1	0	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0024	1	0	1	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0025	1	0	0	1	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0026	1	1	0	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0027	1	0	0	1	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0028	1	0	0	1	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0029	1	1	0	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0030	1	0	0	1	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0031	1	0	1	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0032	1	0	0	1	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0033	1	0	0	1	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0034	1	1	0	0	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	g0035	1	0	0	1	0	0	C1GALT1C1	chrX	120620674	120635054
C1GALT1_chr7_7177544_7253616	0/0	g0001	13	1	5	5	0	2	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0002	6	6	0	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	1/0	g0003	4	0	0	0	2	1	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/1	g0004	4	0	2	0	1	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0005	4	0	0	4	0	0	C1GALT1	chr7	7177544	7253616