JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1GALT1_chr7_7177544_7253616	0/0	g0306	1	1	0	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0307	1	0	1	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0308	1	1	0	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0309	1	1	0	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0310	1	1	0	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0311	1	1	0	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0312	1	0	0	1	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0313	1	0	0	1	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0314	1	0	0	1	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0315	1	0	0	1	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0316	1	0	0	1	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0317	1	1	0	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0318	1	1	0	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0319	1	1	0	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0320	1	1	0	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0321	1	1	0	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0322	1	0	1	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0323	1	1	0	0	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0324	1	0	0	0	0	1	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0325	1	0	0	1	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0326	1	0	0	1	0	0	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	g0327	1	1	0	0	0	0	C1GALT1	chr7	7177544	7253616
C1QA_chr1_22631628_22644678	0/0	g0001	207	52	39	93	4	19	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	1/0	g0002	117	3	23	68	11	11	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0003	46	6	8	25	1	6	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0004	11	0	7	4	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0005	8	7	1	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0006	6	0	0	6	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0007	6	6	0	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0008	4	4	0	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0009	4	3	1	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0010	3	3	0	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0011	3	3	0	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0012	2	0	0	2	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0013	2	2	0	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/1	g0014	2	1	0	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0015	2	1	1	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0016	2	0	2	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0017	1	0	0	1	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0018	1	1	0	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0019	1	1	0	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0020	1	1	0	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0021	1	1	0	0	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0022	1	0	0	1	0	0	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	g0023	1	1	0	0	0	0	C1QA	chr1	22631628	22644678
C1QBP_chr17_5427777_5444155	0/0	g0001	64	1	7	46	1	9	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0002	30	0	1	25	1	3	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	1/0	g0003	23	5	11	1	1	4	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0004	21	0	2	16	0	3	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0005	13	0	0	9	0	4	C1QBP	chr17	5427777	5444155