JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1QBP_chr17_5427777_5444155	0/0	g0106	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0107	1	0	0	0	1	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0108	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0109	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0110	1	0	1	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0111	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0112	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0113	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0114	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0115	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0116	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0117	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0118	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0119	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0120	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0121	1	0	0	1	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0122	1	0	0	1	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0123	1	0	0	1	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0124	1	0	0	0	0	1	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0125	1	0	0	0	0	1	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0126	1	0	0	1	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0127	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0128	1	0	0	0	1	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0129	1	0	0	1	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0130	1	0	0	1	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0131	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0132	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0133	1	0	0	0	0	1	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0134	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0135	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0136	1	0	0	1	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0137	1	0	1	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0138	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0139	1	0	0	0	0	1	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0140	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0141	1	0	1	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0142	1	0	1	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0143	1	1	0	0	0	0	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	g0144	1	0	0	1	0	0	C1QBP	chr17	5427777	5444155
C1QB_chr1_22648236_22666637	0/0	g0001	40	0	14	22	2	2	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0002	32	0	0	29	0	3	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0003	26	0	4	22	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0004	23	0	0	23	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0005	20	0	1	19	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0006	20	0	10	3	1	6	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0007	13	0	8	2	1	2	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0008	11	0	1	7	0	3	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0009	8	8	0	0	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0010	7	0	0	5	0	2	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	1/0	g0011	7	0	2	1	2	1	C1QB	chr1	22648236	22666637