JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1QB_chr1_22648236_22666637	0/0	g0112	1	0	1	0	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0113	1	1	0	0	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0114	1	0	1	0	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0115	1	1	0	0	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0116	1	0	0	1	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0117	1	0	0	1	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0118	1	0	0	0	1	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0119	1	0	0	1	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0120	1	0	0	1	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0121	1	0	0	1	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0122	1	0	1	0	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0123	1	0	1	0	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0124	1	0	0	0	1	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0125	1	0	1	0	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0126	1	0	1	0	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0127	1	0	0	1	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0128	1	0	0	0	0	1	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0129	1	0	1	0	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0130	1	0	1	0	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0131	1	0	0	0	0	1	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0132	1	0	0	1	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0133	1	0	0	1	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0134	1	1	0	0	0	0	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	g0135	1	1	0	0	0	0	C1QB	chr1	22648236	22666637
C1QC_chr1_22638633_22653108	1/0	g0001	89	1	25	40	8	14	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0002	60	0	25	22	4	9	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0003	44	1	0	43	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0004	38	0	6	32	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0005	36	0	1	27	0	8	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0006	25	14	2	9	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0007	25	22	1	0	0	2	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0008	19	9	4	0	3	3	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0009	16	0	0	16	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0010	8	6	2	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0011	7	6	1	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0012	6	6	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/1	g0013	6	2	2	0	0	1	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0014	5	5	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0015	4	0	4	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0016	4	0	0	4	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0017	4	4	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0018	3	3	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0019	3	3	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0020	3	0	0	3	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0021	3	3	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0022	2	2	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0023	2	0	0	2	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0024	2	0	2	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0025	2	2	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0026	1	0	1	0	0	0	C1QC	chr1	22638633	22653108