JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1QC_chr1_22638633_22653108	0/0	g0027	1	0	0	0	0	1	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0028	1	1	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0029	1	1	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0030	1	0	0	1	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0031	1	0	0	1	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0032	1	0	1	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0033	1	0	0	0	0	1	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0034	1	1	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0035	1	1	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0036	1	0	0	1	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0037	1	0	0	1	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0038	1	0	0	0	0	1	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0039	1	1	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0040	1	0	0	1	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0041	1	0	0	1	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0042	1	0	0	1	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0043	1	0	1	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0044	1	0	1	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0045	1	1	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0046	1	0	0	1	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0047	1	0	1	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0048	1	1	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0049	1	1	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0050	1	1	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0051	1	0	0	1	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0052	1	0	0	1	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0053	1	1	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0054	1	0	0	0	0	1	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0055	1	0	1	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0056	1	0	0	0	0	1	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0057	1	0	1	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0058	1	1	0	0	0	0	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	g0059	1	0	0	0	1	0	C1QC	chr1	22638633	22653108
C1QL1_chr17_44954693_44973303	1/0	g0001	84	2	22	46	5	8	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0002	45	15	7	17	2	4	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0003	40	3	4	25	2	6	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0004	23	2	2	18	1	0	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0005	12	1	1	3	0	7	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0006	12	0	0	11	0	1	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/1	g0007	11	0	8	0	0	2	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0008	9	1	1	1	0	6	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0009	8	0	4	4	0	0	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0010	7	7	0	0	0	0	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0011	5	0	0	5	0	0	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0012	5	0	2	0	0	3	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0013	5	5	0	0	0	0	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0014	5	5	0	0	0	0	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0015	5	5	0	0	0	0	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0016	4	1	0	2	1	0	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	g0017	4	0	2	2	0	0	C1QL1	chr17	44954693	44973303