JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1QL2_chr2_119151243_119163751	0/0	g0006	5	5	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0007	5	0	5	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0008	4	4	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0009	4	1	0	2	0	1	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0010	3	3	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0011	3	3	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0012	3	3	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0013	3	3	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0014	3	0	1	0	0	2	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0015	2	2	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0016	2	2	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0017	2	0	0	2	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0018	1	0	0	0	0	1	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0019	1	0	1	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0020	1	0	0	1	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0021	1	0	0	0	0	1	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0022	1	0	1	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0023	1	1	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0024	1	1	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0025	1	1	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0026	1	1	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0027	1	1	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0028	1	1	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0029	1	0	0	0	0	1	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0030	1	0	0	1	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0031	1	0	0	1	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0032	1	1	0	0	0	0	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	g0033	1	0	0	1	0	0	C1QL2	chr2	119151243	119163751
C1QL3_chr10_16508734_16526879	1/0	g0001	101	10	23	50	6	11	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0002	24	2	8	10	1	3	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0003	20	0	11	7	1	1	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0004	19	0	1	17	1	0	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0005	18	1	0	14	0	3	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0006	17	1	0	14	0	2	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0007	17	2	1	12	1	1	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0008	16	1	7	6	0	2	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0009	12	0	4	3	0	5	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0010	12	0	0	10	1	1	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0011	11	1	0	8	0	2	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0012	11	0	2	9	0	0	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0013	7	1	1	4	1	0	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0014	6	1	1	4	0	0	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0015	5	0	1	3	0	1	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0016	5	0	0	5	0	0	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0017	4	1	0	3	0	0	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0018	4	2	2	0	0	0	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0019	4	4	0	0	0	0	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/1	g0020	3	0	0	0	1	1	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0021	3	0	3	0	0	0	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0022	3	3	0	0	0	0	C1QL3	chr10	16508734	16526879