JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1QL3_chr10_16508734_16526879	0/0	g0123	1	0	0	1	0	0	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0124	1	1	0	0	0	0	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0125	1	0	0	0	0	1	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	g0126	1	0	0	1	0	0	C1QL3	chr10	16508734	16526879
C1QL4_chr12_49327409_49342188	1/0	g0001	159	20	34	70	8	26	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0002	17	15	2	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/1	g0003	13	7	0	1	1	3	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0004	7	5	2	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0005	5	4	1	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0006	5	5	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0007	4	3	1	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0008	4	4	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0009	4	0	2	0	1	1	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0010	4	3	0	0	0	1	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0011	3	3	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0012	3	0	2	0	0	1	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0013	3	0	2	0	0	1	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0014	3	0	0	3	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0015	3	0	0	3	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0016	3	0	3	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0017	3	3	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0018	2	2	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0019	2	2	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0020	2	2	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0021	2	2	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0022	2	0	0	2	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0023	2	1	0	0	0	1	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0024	2	1	0	1	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0025	2	2	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0026	2	0	0	2	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0027	2	2	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0028	2	0	0	1	1	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0029	2	1	0	0	0	1	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0030	2	0	0	0	1	1	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0031	1	0	0	1	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0032	1	0	0	0	0	1	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0033	1	0	1	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0034	1	1	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0035	1	1	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0036	1	0	0	0	0	1	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0037	1	0	0	1	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0038	1	1	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0039	1	1	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0040	1	0	0	1	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0041	1	1	0	0	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0042	1	0	0	1	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0043	1	0	0	1	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0044	1	0	0	1	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0045	1	0	0	1	0	0	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	g0046	1	0	0	1	0	0	C1QL4	chr12	49327409	49342188