JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1QTNF2_chr5_160342754_160375626	0/0	g0312	1	0	1	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0313	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0314	1	0	1	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0315	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0316	1	0	0	1	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0317	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0318	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0319	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0320	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0321	1	0	0	0	0	1	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0322	1	0	0	0	0	1	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0323	1	0	0	1	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0324	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0325	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0326	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0327	1	0	1	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0328	1	0	0	1	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0329	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0330	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0331	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0332	1	0	1	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0333	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0334	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0335	1	1	0	0	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	g0336	1	0	0	1	0	0	C1QTNF2	chr5	160342754	160375626
C1QTNF3_chr5_34012858_34048213	0/0	g0001	41	2	13	23	2	1	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0002	20	1	3	8	1	7	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0003	15	0	0	15	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0004	14	0	1	13	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0005	12	0	0	12	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/1	g0006	11	0	3	3	2	2	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0007	11	0	1	10	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0008	8	8	0	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0009	8	0	0	8	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0010	7	1	3	0	1	2	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0011	7	5	2	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0012	5	0	3	2	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0013	5	5	0	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0014	5	0	0	5	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0015	5	1	1	3	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0016	5	1	2	1	1	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0017	4	0	1	3	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0018	4	1	0	0	0	3	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0019	4	0	0	4	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0020	4	0	0	4	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0021	4	4	0	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0022	4	0	0	4	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0023	4	0	2	2	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0024	4	4	0	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0025	3	3	0	0	0	0	C1QTNF3	chr5	34012858	34048213