JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1QTNF3_chr5_34012858_34048213	0/0	g0176	1	0	0	0	0	1	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0177	1	0	0	1	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0178	1	0	0	1	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0179	1	1	0	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0180	1	1	0	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0181	1	0	1	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0182	1	0	1	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0183	1	0	1	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0184	1	0	0	1	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0185	1	0	1	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0186	1	0	0	1	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0187	1	0	0	1	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0188	1	0	0	1	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0189	1	1	0	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0190	1	1	0	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0191	1	1	0	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	1/0	g0192	1	0	0	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0193	1	0	0	1	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0194	1	0	0	1	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF3_chr5_34012858_34048213	0/0	g0195	1	1	0	0	0	0	C1QTNF3	chr5	34012858	34048213
C1QTNF4_chr11_47584667_47599411	0/1	g0001	168	43	19	88	8	9	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0002	87	20	15	39	2	11	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0003	61	4	16	34	2	5	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0004	18	1	8	7	0	2	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0005	5	0	3	0	2	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0006	5	0	3	0	1	1	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0007	4	0	2	0	0	2	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0008	4	0	0	4	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	1/0	g0009	3	2	0	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0010	3	3	0	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0011	3	3	0	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0012	3	0	3	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0013	2	2	0	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0014	2	0	0	0	0	2	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0015	2	0	1	0	1	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0016	2	2	0	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0017	2	0	1	0	0	1	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0018	2	0	0	2	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0019	2	0	0	2	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0020	2	0	0	0	0	2	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0021	1	1	0	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0022	1	0	0	0	0	1	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0023	1	0	0	0	0	1	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0024	1	0	1	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0025	1	1	0	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0026	1	1	0	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0027	1	0	0	1	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0028	1	0	1	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0029	1	0	0	1	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0030	1	1	0	0	0	0	C1QTNF4	chr11	47584667	47599411