JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1QTNF4_chr11_47584667_47599411	0/0	g0031	1	0	0	1	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0032	1	1	0	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0033	1	0	1	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0034	1	0	0	0	0	1	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0035	1	0	1	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0036	1	0	1	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0037	1	0	0	0	0	1	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0038	1	0	0	1	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0039	1	1	0	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0040	1	1	0	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0041	1	1	0	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0042	1	0	0	1	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0043	1	0	1	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0044	1	0	1	0	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0045	1	0	0	0	0	1	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0046	1	0	0	0	0	1	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0047	1	0	0	1	0	0	C1QTNF4	chr11	47584667	47599411
C1QTNF4_chr11_47584667_47599411	0/0	g0048	1	0	0	0	0	1	C1QTNF4	chr11	47584667	47599411
C1QTNF5_chr11_119333942_119345883	1/1	g0001	198	35	24	111	4	22	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0002	101	18	35	34	7	7	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0003	53	26	8	12	3	4	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0004	5	0	0	5	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0005	5	0	5	0	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0006	4	4	0	0	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0007	4	0	0	0	0	4	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0008	3	3	0	0	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0009	2	0	1	0	0	1	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0010	2	0	0	0	0	2	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0011	2	0	0	2	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0012	1	0	0	1	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0013	1	0	0	1	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0014	1	1	0	0	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0015	1	1	0	0	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0016	1	0	1	0	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0017	1	1	0	0	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0018	1	0	1	0	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0019	1	0	1	0	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF5_chr11_119333942_119345883	0/0	g0020	1	1	0	0	0	0	C1QTNF5	chr11	119333942	119345883
C1QTNF6_chr22_37175166_37193247	0/0	g0001	60	4	7	42	1	6	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0002	32	2	1	24	0	5	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0003	30	3	4	10	3	10	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0004	27	1	0	24	0	2	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0005	26	0	6	20	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0006	23	6	9	1	3	4	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/1	g0007	22	2	14	0	4	1	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0008	9	0	0	9	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0009	7	7	0	0	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0010	7	0	0	7	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0011	7	1	3	0	1	2	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0012	6	1	2	0	0	3	C1QTNF6	chr22	37175166	37193247