JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1QTNF6_chr22_37175166_37193247	0/0	g0113	1	0	0	1	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0114	1	0	0	1	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0115	1	0	0	1	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0116	1	1	0	0	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0117	1	0	0	1	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0118	1	0	1	0	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0119	1	1	0	0	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0120	1	0	0	0	0	1	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0121	1	0	0	1	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0122	1	1	0	0	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0123	1	0	0	1	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0124	1	0	0	1	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0125	1	0	1	0	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0126	1	0	0	1	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0127	1	0	0	0	0	1	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0128	1	0	1	0	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0129	1	0	0	0	0	1	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0130	1	0	0	1	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0131	1	0	0	0	0	1	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0132	1	0	0	1	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0133	1	1	0	0	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0134	1	1	0	0	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0135	1	1	0	0	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0136	1	1	0	0	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0137	1	0	0	1	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0138	1	1	0	0	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF6_chr22_37175166_37193247	0/0	g0139	1	1	0	0	0	0	C1QTNF6	chr22	37175166	37193247
C1QTNF7_chr4_15423033_15451167	0/0	g0001	23	0	5	18	0	0	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0002	19	1	4	10	0	4	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0003	18	1	1	16	0	0	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0004	16	2	4	9	1	0	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0005	16	1	6	3	0	6	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0006	15	1	6	6	0	2	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0007	12	1	1	8	1	1	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0008	11	0	2	8	1	0	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/1	g0009	11	1	2	6	0	1	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0010	9	0	0	9	0	0	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0011	9	1	0	4	2	2	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0012	9	0	2	6	1	0	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0013	8	1	1	6	0	0	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0014	8	0	2	2	0	4	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0015	8	0	0	7	0	1	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0016	7	0	2	1	2	2	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0017	7	0	1	5	0	1	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0018	6	0	1	5	0	0	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0019	6	0	0	6	0	0	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	1/0	g0020	5	0	2	0	1	1	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0021	5	0	2	3	0	0	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0022	4	4	0	0	0	0	C1QTNF7	chr4	15423033	15451167
C1QTNF7_chr4_15423033_15451167	0/0	g0023	4	4	0	0	0	0	C1QTNF7	chr4	15423033	15451167