JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1QTNF8_chr16_1083226_1101244	0/0	g0159	1	0	1	0	0	0	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	g0160	1	1	0	0	0	0	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	g0161	1	1	0	0	0	0	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	g0162	1	1	0	0	0	0	C1QTNF8	chr16	1083226	1101244
C1QTNF8_chr16_1083226_1101244	0/0	g0163	1	1	0	0	0	0	C1QTNF8	chr16	1083226	1101244
C1QTNF9B_chr13_23886099_23902502	0/0	g0001	158	25	25	74	8	26	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0002	31	3	11	12	2	3	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0003	21	0	0	21	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0004	17	0	0	15	0	2	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0005	14	0	10	2	1	1	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0006	12	0	0	11	0	1	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0007	11	0	6	0	2	3	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0008	6	0	0	6	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0009	6	5	1	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	1/0	g0010	6	5	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0011	6	0	1	5	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0012	5	0	4	1	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0013	4	0	0	4	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0014	4	4	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0015	4	3	1	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0016	4	0	3	0	1	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0017	3	0	3	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0018	3	0	1	1	1	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0019	3	0	0	3	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0020	3	3	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0021	3	3	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0022	3	3	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0023	3	0	0	3	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0024	2	0	2	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0025	2	0	0	0	0	2	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0026	2	0	0	2	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0027	2	0	0	0	0	2	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0028	2	0	0	2	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0029	2	0	2	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0030	2	0	0	2	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0031	2	2	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0032	2	2	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0033	2	2	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0034	2	2	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0035	2	2	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0036	2	0	0	0	0	2	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0037	2	0	0	2	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0038	2	2	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0039	2	0	0	2	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0040	2	0	2	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0041	2	2	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0042	2	2	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0043	2	2	0	0	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0044	1	0	0	1	0	0	C1QTNF9B	chr13	23886099	23902502
C1QTNF9B_chr13_23886099_23902502	0/0	g0045	1	0	0	1	0	0	C1QTNF9B	chr13	23886099	23902502