JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1QTNF9_chr13_24304580_24327531	0/0	g0199	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0200	1	1	0	0	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0201	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0202	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0203	1	0	1	0	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0204	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0205	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0206	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0207	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0208	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0209	1	0	0	0	0	1	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0210	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0211	1	0	1	0	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0212	1	0	1	0	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0213	1	0	0	0	0	1	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0214	1	1	0	0	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0215	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0216	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0217	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0218	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0219	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0220	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0221	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0222	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0223	1	0	1	0	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0224	1	0	0	0	1	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0225	1	0	0	1	0	0	C1QTNF9	chr13	24304580	24327531
C1QTNF9_chr13_24304580_24327531	0/0	g0226	1	0	0	0	1	0	C1QTNF9	chr13	24304580	24327531
C1RL_chr12_7089554_7114214	0/0	g0001	17	5	4	5	0	3	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0002	11	0	2	7	0	2	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0003	10	0	0	5	0	5	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0004	8	1	1	5	1	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0005	8	1	0	7	0	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0006	8	0	0	6	0	2	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0007	6	0	0	5	1	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0008	5	1	1	3	0	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0009	5	0	4	0	0	1	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0010	4	4	0	0	0	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0011	4	0	4	0	0	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0012	4	2	0	1	1	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0013	4	4	0	0	0	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0014	4	0	3	0	0	1	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0015	4	0	0	3	0	1	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0016	3	3	0	0	0	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0017	3	0	0	3	0	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0018	3	0	3	0	0	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0019	3	1	0	0	2	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0020	3	0	1	2	0	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0021	3	0	0	3	0	0	C1RL	chr12	7089554	7114214
C1RL_chr12_7089554_7114214	0/0	g0022	3	0	2	0	0	1	C1RL	chr12	7089554	7114214