JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1R_chr12_7075219_7097445	0/0	g0227	1	0	1	0	0	0	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	g0228	1	0	1	0	0	0	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	g0229	1	1	0	0	0	0	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	g0230	1	0	1	0	0	0	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	g0231	1	1	0	0	0	0	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	g0232	1	0	1	0	0	0	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	g0233	1	0	0	0	0	1	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	g0234	1	0	0	0	0	1	C1R	chr12	7075219	7097445
C1R_chr12_7075219_7097445	0/0	g0235	1	1	0	0	0	0	C1R	chr12	7075219	7097445
C1S_chr12_7055718_7076032	0/0	g0001	153	21	39	63	8	22	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0002	25	6	5	9	2	3	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0003	17	0	0	17	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0004	15	12	3	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0005	14	12	0	2	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0006	14	0	0	14	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0007	9	0	0	7	0	2	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/1	g0008	8	2	2	1	0	2	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0009	7	0	0	7	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	1/0	g0010	6	0	3	0	2	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0011	5	0	0	3	0	2	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0012	4	4	0	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0013	3	3	0	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0014	3	0	3	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0015	3	1	2	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0016	3	0	0	3	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0017	3	0	0	3	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0018	3	3	0	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0019	3	3	0	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0020	3	0	0	3	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0021	2	0	0	1	0	1	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0022	2	2	0	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0023	2	0	0	2	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0024	2	0	0	0	0	2	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0025	2	0	0	2	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0026	2	0	2	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0027	2	2	0	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0028	2	2	0	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0029	2	1	1	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0030	2	0	1	0	0	1	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0031	1	0	0	1	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0032	1	0	0	1	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0033	1	0	0	1	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0034	1	0	0	1	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0035	1	1	0	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0036	1	0	0	1	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0037	1	0	0	1	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0038	1	1	0	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0039	1	0	1	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0040	1	0	1	0	0	0	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	g0041	1	0	0	0	1	0	C1S	chr12	7055718	7076032