JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1orf100_chr1_244347635_244394663	0/0	g0413	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0414	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0415	1	0	0	1	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0416	1	0	1	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0417	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0418	1	0	0	1	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0419	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0420	1	0	0	1	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0421	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0422	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0423	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0424	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0425	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0426	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0427	1	0	1	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0428	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0429	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0430	1	0	1	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0431	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0432	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0433	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0434	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0435	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0436	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0437	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0438	1	0	1	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0439	1	0	0	1	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	1/0	g0440	1	0	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0441	1	0	1	0	0	0	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	g0442	1	1	0	0	0	0	C1orf100	chr1	244347635	244394663
C1orf105_chr1_172415685_172473829	0/0	g0001	21	1	8	8	1	3	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0002	19	0	3	13	3	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0003	16	0	2	10	0	4	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0004	7	0	4	2	0	1	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0005	5	0	4	0	1	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0006	5	5	0	0	0	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0007	4	0	0	4	0	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0008	4	0	0	4	0	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0009	4	0	4	0	0	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/1	g0010	4	0	1	0	1	1	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0011	4	0	0	4	0	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0012	4	0	4	0	0	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0013	3	0	0	3	0	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0014	3	3	0	0	0	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0015	3	1	2	0	0	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0016	3	0	0	3	0	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0017	3	0	0	3	0	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0018	3	0	0	3	0	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0019	3	0	0	3	0	0	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	g0020	3	0	0	2	0	1	C1orf105	chr1	172415685	172473829