JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C1orf53_chr1_197897630_197912362	0/0	g0009	4	0	0	4	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0010	4	1	1	0	1	1	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	1/0	g0011	4	3	0	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0012	4	4	0	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0013	3	3	0	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0014	3	0	3	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0015	2	0	0	2	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0016	2	0	0	2	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0017	2	1	1	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0018	1	0	0	0	1	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0019	1	1	0	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0020	1	1	0	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0021	1	0	1	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0022	1	0	0	0	1	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0023	1	0	1	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0024	1	0	0	1	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0025	1	0	0	1	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0026	1	0	0	0	0	1	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0027	1	0	1	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0028	1	0	1	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0029	1	1	0	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0030	1	1	0	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0031	1	0	0	1	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0032	1	0	0	1	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0033	1	0	1	0	0	0	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	g0034	1	1	0	0	0	0	C1orf53	chr1	197897630	197912362
C1orf54_chr1_150267790_150285916	0/0	g0001	85	17	21	29	3	15	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0002	76	0	8	53	4	11	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0003	28	2	5	13	5	3	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0004	27	0	7	20	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0005	21	0	7	5	1	8	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0006	18	1	2	12	0	3	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0007	14	0	0	14	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0008	11	2	3	5	0	1	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0009	9	0	0	9	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0010	8	7	1	0	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0011	8	8	0	0	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/1	g0012	7	0	6	0	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0013	7	7	0	0	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0014	6	0	1	4	0	1	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0015	6	6	0	0	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0016	5	0	0	5	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0017	4	4	0	0	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0018	4	4	0	0	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0019	4	4	0	0	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0020	3	3	0	0	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0021	3	1	1	0	1	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0022	2	2	0	0	0	0	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0023	2	0	1	0	0	1	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	g0024	2	0	0	2	0	0	C1orf54	chr1	150267790	150285916