JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C20orf144_chr20_33657327_33668908	0/0	g0015	1	1	0	0	0	0	C20orf144	chr20	33657327	33668908
C20orf173_chr20_35521979_35534652	0/1	g0001	212	45	29	109	11	17	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0002	72	27	16	18	3	8	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0003	25	1	4	9	2	9	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0004	9	0	7	2	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0005	9	4	1	0	0	4	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0006	7	5	2	0	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0007	7	1	3	0	1	2	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0008	3	0	2	0	1	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0009	3	0	0	3	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0010	2	2	0	0	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0011	2	2	0	0	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0012	2	2	0	0	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0013	1	0	0	1	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0014	1	0	0	0	0	1	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0015	1	0	0	1	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0016	1	0	0	1	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	1/0	g0017	1	0	0	0	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0018	1	0	1	0	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0019	1	1	0	0	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0020	1	0	0	1	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0021	1	0	0	0	0	1	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0022	1	1	0	0	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0023	1	1	0	0	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0024	1	0	0	1	0	0	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	g0025	1	0	1	0	0	0	C20orf173	chr20	35521979	35534652
C20orf202_chr20_1198454_1214076	1/0	g0001	218	24	43	116	10	24	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0002	51	24	7	18	1	1	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0003	23	0	1	20	0	2	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/1	g0004	21	0	8	1	2	9	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0005	17	12	1	4	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0006	13	1	8	0	1	3	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0007	12	0	0	12	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0008	6	1	1	4	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0009	5	5	0	0	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0010	4	4	0	0	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0011	4	4	0	0	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0012	4	0	0	4	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0013	3	3	0	0	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0014	3	2	0	1	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0015	3	0	1	0	2	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0016	3	3	0	0	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0017	3	2	1	0	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0018	2	2	0	0	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0019	2	2	0	0	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0020	2	0	2	0	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0021	2	0	2	0	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0022	1	1	0	0	0	0	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0023	1	0	0	0	0	1	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	g0024	1	1	0	0	0	0	C20orf202	chr20	1198454	1214076