JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C2CD3_chr11_74007718_74176002	0/0	g0313	1	1	0	0	0	0	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	g0314	1	1	0	0	0	0	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	g0315	1	1	0	0	0	0	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	g0316	1	1	0	0	0	0	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	g0317	1	1	0	0	0	0	C2CD3	chr11	74007718	74176002
C2CD4A_chr15_62061977_62075917	1/0	g0001	235	62	32	110	10	20	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/1	g0002	169	24	41	81	8	14	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	g0003	3	3	0	0	0	0	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	g0004	1	0	1	0	0	0	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	g0005	1	1	0	0	0	0	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	g0006	1	0	0	1	0	0	C2CD4A	chr15	62061977	62075917
C2CD4B_chr15_62158535_62170285	0/0	g0001	141	36	34	51	6	14	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	1/0	g0002	114	15	12	74	1	11	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0003	77	6	11	48	4	8	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/1	g0004	48	31	8	0	1	7	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0005	18	0	0	16	0	2	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0006	8	7	1	0	0	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0007	5	1	1	0	0	3	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0008	3	0	3	0	0	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0009	3	0	0	3	0	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0010	2	0	0	2	0	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0011	2	0	2	0	0	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0012	1	0	0	1	0	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0013	1	0	0	1	0	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0014	1	0	0	0	1	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0015	1	0	0	1	0	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0016	1	1	0	0	0	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0017	1	0	0	0	0	1	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0018	1	0	0	1	0	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0019	1	0	0	1	0	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0020	1	0	0	0	1	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0021	1	1	0	0	0	0	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	g0022	1	0	0	1	0	0	C2CD4B	chr15	62158535	62170285
C2CD4C_chr19_400445_414147	0/1	g0001	31	2	13	5	2	8	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0002	13	1	1	11	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0003	12	0	0	9	0	3	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0004	8	8	0	0	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0005	7	0	3	4	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0006	6	0	0	6	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0007	6	0	0	6	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0008	5	0	0	5	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0009	5	1	0	2	0	2	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0010	5	4	1	0	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0011	5	0	0	5	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0012	5	0	0	5	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0013	4	4	0	0	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0014	4	0	4	0	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0015	4	0	4	0	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0016	4	0	0	4	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0017	3	0	0	3	0	0	C2CD4C	chr19	400445	414147