JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C2CD4C_chr19_400445_414147	0/0	g0168	1	0	0	1	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0169	1	0	0	1	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0170	1	0	0	1	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0171	1	1	0	0	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0172	1	1	0	0	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0173	1	1	0	0	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0174	1	1	0	0	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0175	1	1	0	0	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0176	1	0	1	0	0	0	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	g0177	1	0	1	0	0	0	C2CD4C	chr19	400445	414147
C2CD4D_chr1_151832818_151844820	0/0	g0001	214	33	44	116	6	15	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/1	g0002	91	3	7	49	8	23	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0003	85	37	24	12	3	9	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0004	14	14	0	0	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0005	6	0	0	6	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0006	6	0	6	0	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0007	3	3	0	0	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0008	2	0	0	2	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0009	2	0	0	2	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0010	2	2	0	0	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0011	1	0	0	1	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0012	1	0	0	1	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0013	1	0	0	1	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0014	1	0	0	1	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0015	1	0	0	0	1	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0016	1	0	0	1	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0017	1	0	1	0	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0018	1	0	1	0	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0019	1	1	0	0	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0020	1	0	0	1	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	1/0	g0021	1	0	0	0	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0022	1	0	0	1	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0023	1	0	1	0	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0024	1	1	0	0	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0025	1	1	0	0	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0026	1	1	0	0	0	0	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	g0027	1	0	0	0	0	1	C2CD4D	chr1	151832818	151844820
C2CD5_chr12_22443583_22549542	0/0	g0001	3	0	3	0	0	0	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	g0002	2	2	0	0	0	0	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	g0003	2	0	0	0	0	2	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	g0004	2	2	0	0	0	0	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	g0005	2	0	0	2	0	0	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	g0006	2	2	0	0	0	0	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	g0007	2	0	1	0	0	1	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	g0008	2	2	0	0	0	0	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	g0009	2	0	2	0	0	0	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	g0010	1	1	0	0	0	0	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	g0011	1	1	0	0	0	0	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	g0012	1	1	0	0	0	0	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	g0013	1	1	0	0	0	0	C2CD5	chr12	22443583	22549542