JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C2orf42_chr2_70144885_70196019	0/0	g0320	1	1	0	0	0	0	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	g0321	1	1	0	0	0	0	C2orf42	chr2	70144885	70196019
C2orf49_chr2_105332540_105354211	0/0	g0001	117	28	9	68	2	10	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	1/0	g0002	63	17	5	31	2	7	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0003	59	1	13	31	4	10	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0004	32	0	16	10	2	4	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/1	g0005	21	3	8	9	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0006	15	2	3	5	2	3	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0007	9	0	6	0	2	1	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0008	8	0	3	5	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0009	7	0	0	6	0	1	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0010	6	5	0	0	0	1	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0011	5	1	0	4	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0012	5	0	3	0	2	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0013	5	0	0	5	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0014	5	5	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0015	4	4	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0016	4	0	0	1	0	3	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0017	2	0	0	2	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0018	2	0	0	2	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0019	2	2	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0020	2	2	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0021	2	2	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0022	2	2	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0023	2	1	1	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0024	2	2	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0025	1	0	0	0	0	1	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0026	1	0	0	1	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0027	1	1	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0028	1	1	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0029	1	0	0	0	0	1	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0030	1	1	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0031	1	1	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0032	1	0	0	1	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0033	1	1	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0034	1	1	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0035	1	1	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0036	1	0	0	1	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0037	1	0	0	1	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0038	1	0	0	1	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0039	1	1	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0040	1	0	0	1	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0041	1	0	0	1	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0042	1	0	0	1	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0043	1	1	0	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0044	1	0	1	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0045	1	0	1	0	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0046	1	0	0	0	0	1	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0047	1	0	0	1	0	0	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	g0048	1	0	0	0	0	1	C2orf49	chr2	105332540	105354211