JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACOXL_chr2_110727573_111123548	0/0	g0145	1	1	0	0	0	0	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	g0146	1	1	0	0	0	0	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	g0147	1	0	1	0	0	0	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	g0148	1	0	1	0	0	0	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	g0149	1	1	0	0	0	0	ACOXL	chr2	110727573	111123548
ACOXL_chr2_110727573_111123548	0/0	g0150	1	1	0	0	0	0	ACOXL	chr2	110727573	111123548
ACP1_chr2_259947_283283	0/0	g0001	97	7	18	63	2	7	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0002	67	11	10	33	5	8	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0003	56	14	14	8	5	15	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	1/0	g0004	29	2	3	21	2	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/1	g0005	11	8	1	0	0	1	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0006	7	0	6	1	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0007	4	4	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0008	3	0	0	0	0	3	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0009	3	3	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0010	3	3	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0011	3	0	0	3	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0012	3	0	0	3	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0013	3	0	0	3	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0014	3	3	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0015	3	0	2	0	0	1	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0016	3	2	1	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0017	3	3	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0018	3	0	2	0	1	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0019	3	0	0	3	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0020	2	2	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0021	2	0	0	2	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0022	2	0	0	2	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0023	2	0	1	1	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0024	2	2	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0025	2	0	0	0	0	2	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0026	2	0	1	1	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0027	2	2	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0028	2	0	0	0	2	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0029	2	0	0	2	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0030	2	2	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0031	2	2	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0032	2	2	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0033	2	1	1	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0034	1	1	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0035	1	0	1	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0036	1	0	1	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0037	1	0	0	0	0	1	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0038	1	1	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0039	1	0	0	1	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0040	1	0	0	0	0	1	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0041	1	1	0	0	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0042	1	0	0	1	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0043	1	0	0	1	0	0	ACP1	chr2	259947	283283
ACP1_chr2_259947_283283	0/0	g0044	1	0	0	1	0	0	ACP1	chr2	259947	283283