JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C2orf80_chr2_208160347_208195030	0/0	g0317	1	0	0	0	1	0	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	g0318	1	0	0	0	0	1	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	g0319	1	0	0	0	0	1	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	g0320	1	0	0	0	1	0	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	g0321	1	0	0	0	0	1	C2orf80	chr2	208160347	208195030
C2orf81_chr2_74409177_74426619	0/1	g0001	52	1	3	45	1	1	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0002	49	4	16	17	3	9	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0003	24	0	3	21	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	1/0	g0004	19	2	5	5	3	3	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0005	18	0	1	16	0	1	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0006	15	9	0	4	0	2	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0007	11	11	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0008	10	0	5	5	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0009	9	0	1	8	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0010	6	0	1	5	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0011	6	0	0	6	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0012	6	6	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0013	6	5	1	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0014	5	5	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0015	5	0	3	1	1	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0016	4	0	4	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0017	4	4	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0018	4	2	1	1	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0019	4	2	0	1	0	1	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0020	4	4	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0021	4	0	0	2	0	2	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0022	4	0	0	4	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0023	3	0	1	2	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0024	3	3	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0025	3	0	3	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0026	3	0	0	3	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0027	3	0	0	0	0	3	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0028	3	0	1	2	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0029	2	2	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0030	2	0	1	0	0	1	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0031	2	0	0	2	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0032	2	0	0	2	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0033	2	0	0	2	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0034	2	2	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0035	2	0	1	0	0	1	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0036	2	0	2	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0037	2	2	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0038	2	2	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0039	2	1	1	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0040	2	2	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0041	2	0	1	0	1	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0042	2	0	0	0	1	1	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0043	2	2	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0044	2	2	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0045	1	1	0	0	0	0	C2orf81	chr2	74409177	74426619