JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C2orf81_chr2_74409177_74426619	0/0	g0096	1	0	0	1	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0097	1	1	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0098	1	0	0	0	0	1	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0099	1	0	0	0	1	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0100	1	0	1	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0101	1	1	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0102	1	0	0	1	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0103	1	1	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0104	1	1	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0105	1	0	0	0	0	1	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0106	1	0	0	0	0	1	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0107	1	0	0	0	0	1	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0108	1	1	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0109	1	0	1	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0110	1	0	0	1	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0111	1	0	1	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0112	1	0	1	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0113	1	0	0	0	1	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0114	1	0	0	0	0	1	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0115	1	1	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0116	1	1	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0117	1	1	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0118	1	0	1	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0119	1	0	0	0	0	1	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0120	1	0	0	0	0	1	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0121	1	0	1	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0122	1	1	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0123	1	1	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0124	1	1	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0125	1	0	0	1	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0126	1	0	0	1	0	0	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	g0127	1	1	0	0	0	0	C2orf81	chr2	74409177	74426619
C2orf88_chr2_190175863_190208484	0/0	g0001	7	0	4	3	0	0	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0002	7	0	0	4	1	2	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0003	6	6	0	0	0	0	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0004	5	0	0	5	0	0	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0005	5	0	0	4	0	1	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0006	5	1	2	0	2	0	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0007	4	4	0	0	0	0	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0008	4	0	0	2	0	2	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0009	4	0	0	0	1	3	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0010	4	0	0	4	0	0	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0011	4	0	0	4	0	0	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0012	3	0	0	1	0	2	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0013	3	0	0	2	0	1	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0014	3	0	0	3	0	0	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0015	3	0	1	2	0	0	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0016	3	0	0	3	0	0	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0017	3	0	0	3	0	0	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	g0018	3	0	0	3	0	0	C2orf88	chr2	190175863	190208484