JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C3orf14_chr3_62314022_62341213	0/0	g0106	1	1	0	0	0	0	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	g0107	1	0	0	1	0	0	C3orf14	chr3	62314022	62341213
C3orf18_chr3_50553025_50572747	0/0	g0001	108	10	20	51	5	22	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0002	61	0	12	47	0	2	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0003	57	10	11	31	2	3	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/1	g0004	28	2	7	13	3	2	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0005	16	14	2	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0006	10	1	8	0	1	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0007	9	0	0	8	0	1	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0008	7	7	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0009	6	6	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0010	6	6	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0011	6	6	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0012	5	2	2	0	0	1	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0013	4	1	0	0	0	3	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	1/0	g0014	3	2	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0015	3	0	3	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0016	3	3	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0017	2	0	2	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0018	2	0	0	2	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0019	2	0	1	0	1	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0020	2	2	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0021	2	0	0	0	2	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0022	2	0	2	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0023	2	2	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0024	2	0	0	2	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0025	2	2	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0026	2	0	2	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0027	1	1	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0028	1	0	0	1	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0029	1	0	0	1	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0030	1	0	0	0	0	1	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0031	1	0	0	1	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0032	1	0	0	1	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0033	1	0	0	1	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0034	1	1	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0035	1	1	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0036	1	0	1	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0037	1	1	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0038	1	0	0	0	0	1	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0039	1	0	0	1	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0040	1	0	0	1	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0041	1	0	0	1	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0042	1	1	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0043	1	1	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0044	1	0	0	1	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0045	1	0	0	1	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0046	1	1	0	0	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0047	1	0	0	1	0	0	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	g0048	1	0	1	0	0	0	C3orf18	chr3	50553025	50572747