JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C3orf85_chr3_109131719_109156401	0/0	g0153	1	0	0	1	0	0	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0154	1	1	0	0	0	0	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0155	1	0	0	0	1	0	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0156	1	0	0	1	0	0	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0157	1	1	0	0	0	0	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0158	1	1	0	0	0	0	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0159	1	1	0	0	0	0	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0160	1	1	0	0	0	0	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0161	1	1	0	0	0	0	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0162	1	1	0	0	0	0	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0163	1	1	0	0	0	0	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0164	1	1	0	0	0	0	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0165	1	1	0	0	0	0	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0166	1	0	0	0	0	1	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0167	1	0	0	0	0	1	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	g0168	1	0	0	1	0	0	C3orf85	chr3	109131719	109156401
C4A_chr6_31977057_32007681	0/0	g0001	53	0	12	38	2	1	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0002	19	1	0	17	0	1	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0003	15	1	3	11	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0004	15	4	1	7	0	3	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0005	14	6	1	1	1	5	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0006	13	2	6	4	0	1	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0007	10	0	2	5	1	2	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0008	10	1	0	9	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0009	10	0	0	10	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0010	7	0	2	4	0	1	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0011	7	0	0	7	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0012	7	5	2	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0013	6	1	3	0	2	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0014	5	1	0	0	0	4	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0015	5	5	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0016	5	5	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0017	4	4	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0018	4	0	0	4	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0019	4	0	4	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0020	4	1	2	0	0	1	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0021	4	4	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0022	3	3	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0023	3	1	1	0	0	1	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0024	3	3	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0025	3	0	3	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0026	2	0	0	0	0	2	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0027	2	0	0	2	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0028	2	0	0	0	1	1	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0029	2	0	0	2	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0030	2	1	0	0	1	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0031	2	0	0	2	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0032	2	1	1	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0033	2	0	0	2	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0034	2	0	0	2	0	0	C4A	chr6	31977057	32007681