JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C4A_chr6_31977057_32007681	0/0	g0085	1	1	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0086	1	1	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0087	1	1	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0088	1	1	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0089	1	1	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0090	1	1	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0091	1	1	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0092	1	0	1	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0093	1	0	0	0	0	1	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0094	1	1	0	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0095	1	0	0	1	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0096	1	0	0	1	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0097	1	0	0	0	0	1	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0098	1	0	1	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0099	1	0	0	1	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0100	1	0	0	1	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0101	1	0	0	1	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0102	1	0	1	0	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0103	1	0	0	1	0	0	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	g0104	1	0	0	0	0	1	C4A	chr6	31977057	32007681
C4BPA_chr1_207099233_207149972	0/0	g0001	4	0	0	4	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0002	3	0	3	0	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0003	3	0	1	1	0	1	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0004	3	3	0	0	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0005	2	0	2	0	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0006	2	0	0	2	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0007	2	0	0	2	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0008	2	2	0	0	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0009	2	0	2	0	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0010	2	0	0	0	2	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0011	2	0	0	2	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0012	2	0	0	2	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0013	2	0	0	2	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0014	2	0	1	1	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0015	2	0	0	2	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0016	2	0	0	0	1	1	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0017	2	0	1	0	1	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0018	2	0	2	0	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0019	2	0	1	0	0	1	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0020	2	0	0	0	0	2	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0021	2	0	0	0	0	2	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0022	2	0	1	0	1	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0023	2	0	2	0	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0024	2	2	0	0	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0025	2	0	2	0	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0026	1	0	0	0	0	1	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0027	1	0	1	0	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0028	1	1	0	0	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0029	1	1	0	0	0	0	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	g0030	1	1	0	0	0	0	C4BPA	chr1	207099233	207149972