JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACP4_chr19_50785415_50800219	0/0	g0016	3	0	1	0	2	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0017	3	0	2	0	0	1	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0018	3	0	0	0	0	3	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0019	3	2	0	1	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0020	3	3	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0021	2	0	1	1	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0022	2	1	1	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0023	2	2	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0024	2	0	0	0	0	2	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0025	2	0	2	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0026	1	0	0	0	1	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0027	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0028	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0029	1	0	1	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0030	1	0	0	1	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0031	1	0	0	1	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0032	1	0	0	1	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0033	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0034	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0035	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0036	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0037	1	0	0	1	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0038	1	0	0	0	0	1	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0039	1	0	1	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0040	1	0	0	0	0	1	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0041	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0042	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0043	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0044	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0045	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0046	1	0	0	1	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0047	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0048	1	0	0	0	0	1	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0049	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0050	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0051	1	1	0	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0052	1	0	0	0	0	1	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0053	1	0	1	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0054	1	0	0	0	0	1	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0055	1	0	1	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0056	1	0	0	0	0	1	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0057	1	0	1	0	0	0	ACP4	chr19	50785415	50800219
ACP4_chr19_50785415_50800219	0/0	g0058	1	0	1	0	0	0	ACP4	chr19	50785415	50800219
ACP5_chr19_11569660_11582645	1/1	g0001	187	22	42	94	9	18	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0002	21	9	5	3	2	2	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0003	17	0	5	12	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0004	14	0	2	3	2	7	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0005	11	9	2	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0006	9	0	2	3	0	4	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0007	9	0	0	9	0	0	ACP5	chr19	11569660	11582645