JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACP5_chr19_11569660_11582645	0/0	g0058	1	1	0	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0059	1	0	0	1	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0060	1	0	0	1	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0061	1	1	0	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0062	1	1	0	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0063	1	1	0	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0064	1	0	0	1	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0065	1	1	0	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0066	1	0	1	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0067	1	0	1	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0068	1	0	0	1	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0069	1	0	0	0	0	1	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0070	1	1	0	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0071	1	0	0	0	0	1	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0072	1	0	0	1	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0073	1	1	0	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0074	1	0	0	1	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0075	1	0	0	1	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0076	1	0	0	0	0	1	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0077	1	1	0	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0078	1	0	0	0	1	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0079	1	0	0	1	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0080	1	1	0	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0081	1	0	0	0	1	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0082	1	0	1	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0083	1	1	0	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0084	1	0	1	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0085	1	1	0	0	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0086	1	0	0	1	0	0	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	g0087	1	0	1	0	0	0	ACP5	chr19	11569660	11582645
ACP6_chr1_147637230_147675524	0/0	g0001	37	2	9	21	2	3	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0002	24	3	11	2	6	2	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0003	23	0	0	23	0	0	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0004	16	0	1	11	1	3	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0005	12	0	3	5	0	4	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0006	10	0	2	5	1	2	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0007	9	0	0	9	0	0	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0008	8	8	0	0	0	0	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0009	7	0	0	7	0	0	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0010	7	0	1	6	0	0	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0011	6	6	0	0	0	0	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0012	6	0	0	6	0	0	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0013	6	3	2	0	1	0	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0014	5	0	0	3	0	2	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0015	5	0	5	0	0	0	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0016	5	0	0	5	0	0	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0017	5	4	1	0	0	0	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0018	4	4	0	0	0	0	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0019	4	4	0	0	0	0	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	g0020	3	1	0	0	0	2	ACP6	chr1	147637230	147675524