JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C4orf54_chr4_99631529_99662828	0/0	g0224	1	0	1	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0225	1	0	0	0	0	1	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0226	1	0	0	1	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0227	1	0	0	1	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0228	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0229	1	0	0	1	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0230	1	0	0	1	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0231	1	0	0	1	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0232	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0233	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0234	1	0	1	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0235	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0236	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0237	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0238	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0239	1	0	1	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0240	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0241	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0242	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0243	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0244	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0245	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0246	1	0	0	1	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0247	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	g0248	1	1	0	0	0	0	C4orf54	chr4	99631529	99662828
C5AR1_chr19_47304861_47327066	0/0	g0001	29	4	3	21	0	1	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0002	27	1	8	14	0	4	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0003	14	4	2	1	1	6	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0004	12	5	4	3	0	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0005	10	4	4	2	0	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0006	8	7	0	0	0	1	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0007	8	0	0	8	0	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0008	8	0	3	3	1	1	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0009	6	0	1	2	1	2	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0010	6	0	1	4	0	1	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0011	6	0	0	3	0	3	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0012	6	0	3	2	0	1	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0013	5	0	0	5	0	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0014	5	0	0	5	0	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/1	g0015	4	2	1	0	0	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0016	4	1	1	1	0	1	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0017	4	0	0	4	0	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0018	4	0	0	4	0	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0019	4	0	2	2	0	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0020	4	0	1	3	0	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0021	3	0	0	3	0	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0022	3	0	2	0	1	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0023	3	1	1	1	0	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0024	3	0	3	0	0	0	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	g0025	3	3	0	0	0	0	C5AR1	chr19	47304861	47327066