JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C5orf46_chr5_147887722_147911538	0/0	g0105	1	0	1	0	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0106	1	0	0	1	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0107	1	0	0	0	0	1	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0108	1	0	0	1	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0109	1	1	0	0	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0110	1	1	0	0	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0111	1	1	0	0	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0112	1	0	0	1	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0113	1	0	0	1	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0114	1	0	0	0	0	1	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0115	1	0	0	1	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0116	1	0	0	1	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0117	1	0	0	1	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0118	1	0	0	0	1	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0119	1	1	0	0	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0120	1	1	0	0	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0121	1	0	0	0	0	1	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0122	1	0	0	1	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0123	1	0	0	1	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0124	1	0	0	1	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0125	1	0	0	1	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0126	1	0	0	1	0	0	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	g0127	1	0	0	0	0	1	C5orf46	chr5	147887722	147911538
C5orf47_chr5_173984170_174011140	0/0	g0001	39	0	8	28	0	3	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	1/0	g0002	26	8	7	4	1	5	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0003	19	4	0	13	0	2	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0004	16	0	3	4	5	4	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0005	15	5	5	0	1	4	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0006	10	9	1	0	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0007	8	0	5	2	0	1	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0008	8	0	1	7	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0009	7	0	0	6	0	1	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0010	7	0	0	7	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0011	6	0	0	6	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0012	6	0	0	5	0	1	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0013	5	0	2	3	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0014	5	0	0	5	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0015	5	5	0	0	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0016	4	0	1	2	0	1	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0017	4	0	2	2	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0018	4	0	2	0	1	1	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0019	4	0	4	0	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0020	4	0	3	0	0	1	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/1	g0021	4	0	1	2	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0022	4	0	0	4	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0023	4	0	0	4	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0024	4	0	0	4	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0025	4	0	4	0	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0026	3	0	0	3	0	0	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	g0027	3	0	0	2	0	1	C5orf47	chr5	173984170	174011140