JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C6orf52_chr6_10666422_10699616	0/0	g0149	1	1	0	0	0	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0150	1	0	1	0	0	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0151	1	0	1	0	0	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0152	1	0	0	1	0	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0153	1	0	0	1	0	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0154	1	0	0	1	0	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0155	1	0	0	0	1	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0156	1	0	0	0	0	1	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0157	1	0	0	0	0	1	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0158	1	0	0	0	0	1	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0159	1	1	0	0	0	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0160	1	1	0	0	0	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0161	1	0	0	1	0	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0162	1	1	0	0	0	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0163	1	0	0	0	1	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0164	1	0	1	0	0	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0165	1	0	0	1	0	0	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	g0166	1	1	0	0	0	0	C6orf52	chr6	10666422	10699616
C6orf58_chr6_127572174_127596820	0/0	g0001	54	0	10	32	0	12	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0002	53	0	7	41	0	5	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0003	43	6	11	19	2	5	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	1/0	g0004	29	3	12	1	6	6	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0005	18	0	0	18	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0006	15	13	1	0	0	1	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0007	14	0	0	14	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0008	11	0	0	11	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0009	6	0	1	4	0	1	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0010	6	6	0	0	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0011	6	1	2	0	1	2	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0012	5	0	0	5	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0013	5	0	0	5	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/1	g0014	5	0	4	0	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0015	5	4	0	0	0	1	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0016	5	0	0	5	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0017	4	4	0	0	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0018	4	4	0	0	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0019	4	0	3	0	1	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0020	4	4	0	0	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0021	3	0	0	3	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0022	3	0	1	2	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0023	3	0	0	3	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0024	3	0	0	3	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0025	3	0	0	1	0	2	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0026	3	0	0	3	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0027	3	0	0	3	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0028	3	0	0	0	2	1	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0029	3	0	2	0	0	1	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0030	3	0	3	0	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0031	2	0	0	2	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0032	2	0	2	0	0	0	C6orf58	chr6	127572174	127596820