JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C6orf58_chr6_127572174_127596820	0/0	g0133	1	1	0	0	0	0	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	g0134	1	1	0	0	0	0	C6orf58	chr6	127572174	127596820
C6orf62_chr6_24699861_24724154	0/0	g0001	54	3	9	40	0	2	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0002	36	0	14	18	1	3	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0003	29	1	1	23	1	3	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0004	16	0	3	5	3	5	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0005	13	2	1	10	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/1	g0006	10	2	3	0	2	2	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0007	9	8	1	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0008	7	7	0	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	1/0	g0009	6	0	2	0	1	2	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0010	5	4	1	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0011	5	2	1	0	0	2	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0012	4	0	0	4	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0013	4	0	2	2	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0014	4	0	2	0	2	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0015	4	1	1	2	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0016	4	0	0	3	0	1	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0017	4	1	2	0	0	1	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0018	3	0	0	3	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0019	3	1	0	1	0	1	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0020	3	3	0	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0021	3	0	0	1	1	1	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0022	3	0	1	2	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0023	3	3	0	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0024	3	0	0	2	0	1	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0025	3	0	0	3	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0026	2	2	0	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0027	2	1	1	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0028	2	0	2	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0029	2	0	2	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0030	2	0	0	2	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0031	2	0	0	0	0	2	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0032	2	0	0	2	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0033	2	0	1	0	1	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0034	2	2	0	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0035	2	0	2	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0036	2	0	0	2	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0037	2	0	0	0	2	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0038	2	0	0	1	0	1	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0039	2	0	0	0	0	2	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0040	2	0	0	2	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0041	2	0	2	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0042	2	2	0	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0043	2	0	0	1	0	1	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0044	2	2	0	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0045	2	0	1	0	1	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0046	2	2	0	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0047	2	2	0	0	0	0	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	g0048	2	2	0	0	0	0	C6orf62	chr6	24699861	24724154