JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ACRV1_chr11_125666522_125685847	0/0	g0001	50	6	9	30	4	1	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0002	28	1	1	17	2	7	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	1/0	g0003	23	0	2	20	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0004	22	0	2	20	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0005	18	3	6	7	0	2	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0006	17	2	2	11	1	1	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0007	16	0	0	16	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0008	16	3	3	8	0	2	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0009	12	0	5	7	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0010	12	0	1	3	3	5	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0011	12	11	1	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0012	9	0	3	6	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0013	9	5	2	2	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0014	7	0	2	4	0	1	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0015	6	2	0	3	0	1	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0016	6	0	1	4	0	1	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0017	5	5	0	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0018	5	0	1	2	0	2	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0019	5	2	2	0	0	1	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0020	4	1	0	0	1	2	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0021	4	4	0	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0022	4	0	2	0	2	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0023	4	0	0	4	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0024	3	1	2	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0025	3	3	0	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0026	3	0	0	3	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0027	3	3	0	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0028	3	3	0	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0029	2	0	1	1	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/1	g0030	2	0	1	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0031	2	0	0	2	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0032	2	2	0	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0033	2	1	1	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0034	2	2	0	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0035	2	0	0	2	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0036	2	1	0	0	0	1	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0037	2	0	0	2	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0038	2	0	0	2	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0039	2	0	1	0	0	1	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0040	2	2	0	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0041	2	0	2	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0042	2	2	0	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0043	2	0	0	2	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0044	1	0	1	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0045	1	0	1	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0046	1	1	0	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0047	1	1	0	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0048	1	1	0	0	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0049	1	0	0	1	0	0	ACRV1	chr11	125666522	125685847
ACRV1_chr11_125666522_125685847	0/0	g0050	1	0	0	1	0	0	ACRV1	chr11	125666522	125685847