JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C9_chr5_39279140_39369495	0/0	g0329	1	0	0	0	0	1	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0330	1	1	0	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0331	1	0	1	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0332	1	0	1	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0333	1	1	0	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0334	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0335	1	0	0	0	1	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0336	1	1	0	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0337	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0338	1	0	1	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0339	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0340	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0341	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0342	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0343	1	1	0	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0344	1	0	1	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0345	1	0	1	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0346	1	1	0	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0347	1	0	0	0	1	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0348	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0349	1	0	0	0	0	1	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0350	1	0	1	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0351	1	1	0	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0352	1	1	0	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0353	1	0	1	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0354	1	1	0	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0355	1	0	1	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0356	1	0	1	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0357	1	0	0	0	0	1	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0358	1	0	1	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0359	1	0	1	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0360	1	1	0	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0361	1	0	1	0	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0362	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0363	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0364	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0365	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0366	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0367	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0368	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	g0369	1	0	0	1	0	0	C9	chr5	39279140	39369495
C9orf131_chr9_35037240_35050986	1/1	g0001	353	74	47	187	10	33	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	g0002	66	17	18	16	3	12	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	g0003	8	3	3	0	1	1	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	g0004	1	0	0	1	0	0	C9orf131	chr9	35037240	35050986
C9orf152_chr9_110194561_110213159	0/0	g0001	40	4	10	19	1	6	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	g0002	39	0	5	33	0	1	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	g0003	25	18	0	6	0	1	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	g0004	24	10	11	0	2	1	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	g0005	24	0	4	17	0	3	C9orf152	chr9	110194561	110213159