JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C9orf153_chr9_86215265_86264657	0/0	g0326	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0327	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0328	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0329	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0330	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0331	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0332	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0333	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0334	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0335	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0336	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0337	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0338	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0339	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0340	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0341	1	1	0	0	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0342	1	1	0	0	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0343	1	1	0	0	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0344	1	0	0	0	0	1	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0345	1	0	1	0	0	0	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	g0346	1	0	0	1	0	0	C9orf153	chr9	86215265	86264657
C9orf24_chr9_34374019_34402810	0/0	g0001	19	0	8	9	1	1	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0002	14	1	1	9	0	3	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0003	14	0	3	9	0	2	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0004	11	1	0	5	0	5	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0005	9	0	0	9	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0006	8	3	1	3	0	1	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0007	8	0	0	8	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0008	7	4	3	0	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0009	6	0	2	0	1	3	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0010	6	0	0	6	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0011	6	0	3	3	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0012	5	0	0	5	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0013	5	5	0	0	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0014	5	0	0	5	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	1/0	g0015	5	4	0	0	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0016	5	0	0	4	0	1	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0017	5	0	0	5	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0018	4	4	0	0	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0019	4	4	0	0	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0020	4	0	0	4	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0021	4	1	3	0	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0022	3	0	0	3	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0023	3	0	0	3	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0024	3	0	3	0	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0025	3	3	0	0	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0026	3	0	0	3	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0027	3	0	2	0	1	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0028	3	0	0	3	0	0	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	g0029	3	0	0	3	0	0	C9orf24	chr9	34374019	34402810