JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C9orf40_chr9_74941583_74957912	0/0	g0006	20	8	5	0	3	4	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0007	6	6	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0008	5	3	1	0	1	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0009	5	1	1	0	1	2	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0010	3	3	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0011	3	3	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0012	2	1	0	0	1	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0013	2	0	0	2	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0014	2	0	0	2	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0015	2	2	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0016	2	0	0	1	0	1	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0017	2	2	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0018	2	2	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0019	2	0	0	2	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0020	2	0	2	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0021	2	2	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0022	1	1	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0023	1	1	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0024	1	0	0	1	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0025	1	1	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0026	1	0	0	1	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0027	1	0	0	1	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0028	1	0	0	1	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0029	1	1	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0030	1	0	0	0	1	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0031	1	1	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0032	1	0	0	1	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0033	1	1	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0034	1	1	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0035	1	0	0	1	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0036	1	0	0	0	0	1	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0037	1	0	0	1	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0038	1	0	0	0	0	1	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0039	1	0	0	0	0	1	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0040	1	0	1	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0041	1	0	0	1	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0042	1	0	0	1	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0043	1	1	0	0	0	0	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	g0044	1	0	0	1	0	0	C9orf40	chr9	74941583	74957912
C9orf43_chr9_113405747_113434690	1/0	g0001	106	21	20	46	5	13	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0002	44	11	8	18	1	6	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/1	g0003	18	0	3	7	4	3	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0004	11	1	5	0	3	2	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0005	8	0	0	8	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0006	7	0	1	3	1	2	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0007	5	5	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0008	4	0	4	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0009	3	3	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0010	3	2	1	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0011	3	1	2	0	0	0	C9orf43	chr9	113405747	113434690