JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C9orf43_chr9_113405747_113434690	0/0	g0062	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0063	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0064	1	0	0	1	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0065	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0066	1	0	1	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0067	1	0	0	1	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0068	1	0	0	0	0	1	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0069	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0070	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0071	1	0	0	1	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0072	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0073	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0074	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0075	1	0	0	1	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0076	1	0	0	1	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0077	1	0	0	1	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0078	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0079	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0080	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0081	1	0	0	0	0	1	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0082	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0083	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0084	1	0	0	0	0	1	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	g0085	1	1	0	0	0	0	C9orf43	chr9	113405747	113434690
C9orf50_chr9_129607225_129626101	0/0	g0001	96	5	17	60	3	11	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0002	44	0	10	28	0	6	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0003	33	6	9	5	4	9	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0004	17	0	0	16	0	1	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0005	16	2	1	7	1	5	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0006	12	2	1	7	0	2	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0007	9	6	1	1	0	1	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0008	8	5	1	0	1	1	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0009	7	4	2	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0010	6	6	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0011	6	0	0	6	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0012	6	6	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0013	6	0	2	2	0	2	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0014	5	4	1	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0015	4	0	1	3	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0016	3	0	0	3	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/1	g0017	3	0	1	0	1	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0018	3	0	3	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0019	3	0	2	0	1	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0020	3	0	0	3	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0021	3	0	0	3	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0022	3	3	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0023	3	2	1	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0024	3	0	3	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0025	3	1	0	1	0	1	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0026	3	0	1	2	0	0	C9orf50	chr9	129607225	129626101