JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C9orf50_chr9_129607225_129626101	0/0	g0077	1	1	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0078	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0079	1	0	1	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0080	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0081	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0082	1	1	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0083	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0084	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0085	1	0	0	0	0	1	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	1/0	g0086	1	0	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0087	1	1	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0088	1	1	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0089	1	1	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0090	1	1	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0091	1	1	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0092	1	1	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0093	1	1	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0094	1	1	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0095	1	0	0	0	1	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0096	1	0	0	0	0	1	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0097	1	0	1	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0098	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0099	1	0	1	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0100	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0101	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0102	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0103	1	1	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0104	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0105	1	1	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0106	1	1	0	0	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0107	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0108	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0109	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0110	1	0	0	1	0	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0111	1	0	0	0	1	0	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	g0112	1	0	0	0	0	1	C9orf50	chr9	129607225	129626101
C9orf57_chr9_72046376_72065613	0/0	g0001	10	0	4	6	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0002	9	5	0	1	0	3	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0003	8	1	3	4	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0004	7	0	3	0	2	2	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0005	6	0	0	4	1	1	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0006	6	0	1	5	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0007	6	0	0	6	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0008	6	0	0	5	0	1	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0009	6	0	0	6	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0010	6	0	1	4	1	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0011	6	0	5	1	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0012	6	0	0	5	0	1	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0013	6	0	0	6	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0014	5	0	5	0	0	0	C9orf57	chr9	72046376	72065613