JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
C9orf57_chr9_72046376_72065613	0/0	g0265	1	0	0	1	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0266	1	1	0	0	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0267	1	1	0	0	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0268	1	1	0	0	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0269	1	0	1	0	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0270	1	1	0	0	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0271	1	1	0	0	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0272	1	1	0	0	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0273	1	1	0	0	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0274	1	1	0	0	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0275	1	0	1	0	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0276	1	1	0	0	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0277	1	1	0	0	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0278	1	1	0	0	0	0	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	g0279	1	1	0	0	0	0	C9orf57	chr9	72046376	72065613
C9orf72_chr9_27541546_27578481	0/0	g0001	19	0	5	12	0	2	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0002	17	0	6	6	0	5	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0003	15	0	3	10	0	2	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0004	12	0	1	11	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0005	9	0	0	7	0	2	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0006	8	1	2	5	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0007	7	2	3	0	1	1	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0008	7	0	0	7	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0009	6	0	0	6	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0010	6	0	3	0	2	1	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0011	5	0	0	5	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0012	5	0	0	5	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0013	4	0	4	0	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0014	4	1	0	3	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0015	4	0	0	0	0	4	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0016	4	0	2	0	1	1	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0017	4	4	0	0	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0018	4	4	0	0	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0019	3	3	0	0	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0020	3	1	2	0	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0021	3	0	0	1	1	1	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0022	3	0	0	3	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0023	3	0	0	3	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0024	3	3	0	0	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0025	3	3	0	0	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0026	3	1	2	0	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0027	3	0	0	3	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0028	3	0	3	0	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0029	2	2	0	0	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0030	2	1	1	0	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0031	2	0	0	0	0	2	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0032	2	2	0	0	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0033	2	0	2	0	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0034	2	0	0	2	0	0	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	g0035	2	0	0	1	0	1	C9orf72	chr9	27541546	27578481